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Contents:

  • Overview of PHANS-C Pipeline
  • Citations for using PHANS-C
  • Get PHANS-C
    • Amazon AWS AMI
    • Docker Image
    • Local Installation
  • PHANS-C Tutorial
    • Get the tutorial folder
    • The Tutorial
    • 1: Construct the Phylogenetic Reference Tree
    • 2: Parse and Format reads from Metagenome
    • 3: Align unknown reads to Reference Alignment
    • 4: Phylogenetic placement of unknown reads
    • 5: Final Summary
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© Copyright 2018, Jaclyn Saunders Revision c6e87997.

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